Brian Mark Anderson, PhD's repositories
Cyclical_Learning_Rate
Code adapted from https://github.com/bckenstler/CLR
AW_Liver_Lobes_To_Raystation
Code for taking segmentations created on the AW and transforming them into Raystation segmentations
Easy_VGG16_UNet
This is code to create an easy to use VGG16 pre-training with UNet attached
Raystation_Export_Oblique_Images_to_mhd
Export obliquely acquired examinations and ROIs to a folder
CAT_Isoshifts
Create text files for shifts and Raystation code to import it
Chung_Lab_Code
Code for the chung lab
DGX-Commands
Basic commands that are useful while running the DGX
Edit_Raystation_Roi_Names
Removing the colons from roi names as they don't work with IBEX
Fixing_RT_Structures
Fixing RT structures ReferencedSOPInstanceUIDs
Installing_Tensorflow
General notes for installing tensorflow
keras_deeplab_v3_plus
Keras implementation of Deeplab v3+ with pretrained weights
MD_Anderson_Intro_To_AI_Workshop
Workshop for summer AI retreat at MD Anderson
PyPiCommands
Common commands for using pypi
Raystation9B_PACS_AutoDownloads
repo for automatically uploading patients where each plan is a new case
Raystation_Export_Exams_As_CSV
script for exporting exams that are given as CSV file
Send_Email_To_Phone
Something to text me phone when code is done running
Slicer_RT_Target_Issue
a jupyter notebook illustrating an issue with representing hollowed, or 'target' structures in 3D slicer
tensorflow
An Open Source Machine Learning Framework for Everyone
Updating_to_TF2
Simple jupyter notebook for updating from my keras work to TF2
Virtual-Environment-Instructions
Instructions for creating virtual environments
Workshop_Modules
A set of modules which might be useful for workshops