Brian Mark Anderson, PhD's repositories
Dicom_RT_and_Images_to_Mask
Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
RegisteringImages
Tools for registering images with Dicom Registration files
Segmentation_Evaluation_Tools
Tools for quantitative evaluation of prediction segmentations (Dice, Jaccard, volume similarity, false_negative, false_positive, mean, median, max, and std surface distances)
Data_Generators
Data generators that I use
Image_Processors_Module
Image processors for keras, predictive models, datasets, and example loaders
Prediction_Model_Class
My base class for letting the server predict from multiple models
RaystationDataMiner_Template
A template for how to evaluate data from RayStation!
AbstractInfoStructure
A series of classes that contain the necessary parts for loading the info structure
DataSearcher
Tool for searching through data generated by the InfoStructure tool
DockerDevContainers
A set of docker dev containers for vs code
ExportTools
Tools for exporting based on the RS InfoStructure
keras_deeplab_v3_plus
Keras implementation of Deeplab v3+ with pretrained weights
PickleObjects
A base class for pickling and unpickling objects
Template_EquipmentTracking
Used for tracking the sterilization requirements of the brachy team
tensorflow
An Open Source Machine Learning Framework for Everyone
UID_Generator
A class to make unique ids in a generator
UNC_DeleteBackupPlans
Repo designed to delete BACKUP_* plans, which are occupying a large amount of space
UNC_Research_Template
A general template for UNC Research Projects
Unzip_Unlink_Csharp
An application built to break the inherent registration in MR images
Visualizing_Model
A class for visualizing a model (kernel and activations)