Brian Karlberg's repositories
ATM
Auto Tune Models - A multi-tenant, multi-data system for automated machine learning (model selection and tuning).
candleDataProcessing
Some scripts to process and collate dose response data
data_model
Schema and synthetic data
drg_rsp_bmeg_extract
get raw response data by cell line / compound for 8 projects
drg_rsp_coding_gene_extract
filter coding genes out of raw BMEG data
drg_rsp_CTRPv2_proto_figs
devel on CTRPv2, 490 compounds
drg_rsp_main
drug response project central repository to coordinate operations repos
Drug_Response_Prediction
Computational drug response prediction using transcriptomic data
grip
Graph Integration Platform
mdl-sys-bnchmrk
Cancer model systems benchmarking
ML_643
Reinforcement learning Q-table, ML 643 class final project
MuSIC
Multi-Scale Integrated Cell
python-reference
Python Reference (The Right Way)
sklearn_accuracy
raw accuracy calculations by subtype
Spoon-Knife
This repo is for demonstration purposes only.
sub-sample_drug_response
Apply sub-sampling framework from cancer sub-typing to cancer drug response in cell lines
TieDIE
Tied Diffusion for Subnetwork Discovery (TieDIE)
VAE_DL_II
Hello world for Deep Learning II class
work_samples
ML-based analysis of multi-omic cancer data
Zenodo_DOI
Test getting a DOI with Zenodo for a GitHub repo