Brian Jimenez's repositories
python-course
Python course
Vina-GPU-2.0
Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.
atm-cli
Command line tool for generating and working with MIDI files.
chroma-pytorch
Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
ColabDesign
Making Protein Design accessible to all via Google Colab!
coronavirus_structural_task_force
Repository for the molecular structures related with Corona virusses and their re-processing
Diffusion_models_from_scratch
Creating a diffusion model from scratch in PyTorch to learn exactly how they work.
foldingdiff
Diffusion models of protein structure; trigonometry and attention are all you need!
Getting-Things-Done-with-Pytorch
Jupyter Notebook tutorials on solving real-world problems with Machine Learning & Deep Learning using PyTorch. Topics: Face detection with Detectron 2, Time Series anomaly detection with LSTM Autoencoders, Object Detection with YOLO v5, Build your first Neural Network, Time Series forecasting for Coronavirus daily cases, Sentiment Analysis with BERT.
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
pdbe-api-training
Interactive Python notebooks for PDBe API training
protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
ProteinMPNN
Code for the ProteinMPNN paper
RFDesign
Protein hallucination and inpainting with RoseTTAFold
RFdiffusion
Code for running RFdiffusion
rust-gso
A Rust implementation of the Glowworm Swarm Optimization algorithm
trDesign
trRosetta for protein design
vk_mini_path_tracer
A beginner-friendly Vulkan path tracing tutorial in under 300 lines of C++.
wtfpython
Exploring Python through counter-intuitive snippets. If you think you know Python, think once more!