Brent Pedersen (brentp)

brentp

Geek Repo

Company:University of Utah

Location:Utrecht, The Netherlands

Twitter:@brent_p

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Organizations
quinlan-lab

Brent Pedersen's repositories

vcfassoc

perform genotype-phenotype-association tests on a VCF with logistic regression.

bw-python

python wrapper to dpryan79's bigwig library using cffi

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bwa-mips

Map sequence from Molecular Inversion Probes with BWA, strip arms, de-dup, ..., profit

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crystal

find clusters and model correlated data from DNA methylation and other genomic sources.

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celltypes450

adjust for cell-type composition in 450K data using houseman's and other methods.

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bcolz

A columnar data container that can be compressed.

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goluaez

ez embedding lua in go

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ififo

ififo provides a fast, sized, generic thread-safe FIFO in golang.

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bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

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cgotbx

yeah, another tabix wrapper for go.

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cnvkit

Copy number variant detection from targeted DNA sequencing

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homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

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poretools

a toolkit for working with Oxford nanopore data

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bigwig

bigwig in go via libbigWig

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biogo

biogo is a bioinformatics library for Go

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bpbio-old

Automatically exported from code.google.com/p/bpbio

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bpgeo

Automatically exported from code.google.com/p/bpgeo

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cgotabix

quick-n-dirty tabix in go using cgo

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ggd-hg38-recipes

data recipes for hg38

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gobitmapbenchmark

A Go project to benchmark various bitmap implementations (this is not a library!)

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gocroaring

Go wrapper for CRoaring

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gqt

A genotype query interface.

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graphics

biogo genomic graphics repository

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recipes

Conda recipes for the bioconda channel.

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sorted-random-go

generate sorted random numbers in #golang

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