Brent Pedersen's repositories
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
inheritance
inheritance models for mendelian diseases
variantkey-nim
nim-wrapper for variantkey -- (chrom, pos, ref, alt) -> uint64
nim-cgranges
nim wrapper for https://github.com/lh3/cgranges for faster interval tree
brentp.github.io
blog hosting
Arraymancer
A fast, ergonomic and portable tensor library in Nim with a deep learning focus for CPU, GPU and embedded devices via OpenMP, Cuda and OpenCL backends
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
docopt.nim
Command line arguments parser that will make you smile (port of docopt to Nim)
duktape-nim
Nim wrapper for the Duktape embeddable Javascript engine.