brentp

cruzdb

python access to UCSC genomes database

duphold

don't get DUP'ed or DEL'ed by your putative SVs.

interlap

fast, pure-python interval overlap testing

seqcover

seqcover allows users to view coverage for hundreds of genes and dozens of samples

go-chartjs

golang library to make https://chartjs.org/ plots (this is vanilla #golang, not gopherjs)

hts-nim-tools

useful command-line tools written to showcase hts-nim

irelate

Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang

bigly

a pileup library that embraces the huge

cigar

simple library for dealing with SAM cigar strings

gsort

sort genomic data

poverlap

significance testing over interval overlaps

lua-stringy

fast lua string operations

bigwig-nim

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

genoiser

use the noise

kexpr-nim

nim wrapper for Heng Li's kexpr math expression evaluator library

nim-gzfile

simple reader and writer for gzipped (and regular) files

pedfile

pedigree file parsing and relatedness calculations for nim

faidx

faidx for golang

covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies

crampex

cram reader in golang via system call to samtools

longSTR

Call STRs in long reads or assembled contigs using TRF

Nim

Nim is a compiled, garbage-collected systems programming language with a design that focuses on efficiency, expressiveness, and elegance (in the order of priority).

blosc2-nim

nim language wrapper for the blosc2 compression libray.

c-blosc2

A simple, compressed, fast and persistent data store library for C

CaBagE-manuscript

cqf-nim

nim wrapper for counting quotient filter

docker-nim-cross

Dockerfile for Nim lang

exter

coordinate transformation exon-space -> genome-space and back again.

hts

biogo high throughput sequencing repository

igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.