brennanaba

alphafold

Open source code for AlphaFold.

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

equivariant-MLP

A library for programmatically generating equivariant layers through constraint solving

En-transformer

Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network

AbLang

AbLang: A language model for antibodies

ImmuneBuilder

Predict the structure of immune receptor proteins

Uni-Fold

ImmuneBuilder

Predict the structure of immune receptor proteins

ABlooper

Tool for modelling the CDRs of antibodies

Paragraph

Antibody paratope prediction using Graph Neural Networks with minimal feature vectors

PLAbDab

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

kasearch

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

SPACE2

Tool for rapid clustering of antibody models by the structure of their CDRs.

PLAbDab

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

Paint4Brains

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

kasearch

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

auto-db-pipeline

Automated antibody database.