Data Science of Bioimages

HER2-overexpression

Prediction of HER2 overexpression status and IHC score as seen in "Predicting the HER2 status in esophageal cancer from tissue microarrays using convolutional neural networks".

worm-swin

Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.

amap

lmagp

Repository of the paper "Language models are good pathologists: using attention-based sequence reduction and text-pretrained transformers for efficient WSI classification"

StainNet

StainNet: a fast and robust stain normalization network

AME

Active Visual Exploration Based on Attention-Map Entropy

bee_tracking

cells_project

mmdetection

OpenMMLab Detection Toolbox and Benchmark

mmdetection-crowddet

OpenMMLab Detection Toolbox and Benchmark

MultiStar

unilm

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

worm-poses

cocoapi-c-elegans

COCO API - Dataset @ http://cocodataset.org/

feature_reg

Feature based registration for fluorescence microscopy images

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

moco-v3

PyTorch implementation of MoCo v3 https//arxiv.org/abs/2104.02057

PanNuke-metrics

Evaluation code for the PanNuke dataset

PanNukeChallenge

SSDNeRF

[ICCV 2023] Single-Stage Diffusion NeRF

topological-autoencoders

Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.

UniGrad