botswana-harvard / ambition

(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial

ambition

(P.I. Joe Jarvis)

Installation

mkdir  ~/.venvs
mkdir  ~/source

# create VENV
python3 -m venv ~/.venvs/ambition

# activate VENV
source ~/.venvs/ambition

# update pip
pip install -U pip ipython

# clone main project
cd ~/source/
git https://github.com/ambition-study/ambition.git

# install requirements
cd ~/source/ambition
pip install -r requirements.txt  # or production

# create database
mysql -u <user> -p -Bse 'create database ambition character set utf8;'

# migrate
python manage.py migrate

# import required data
python manage.py import_randomization_list
python manage.py import_holidays

# check for any obvious issues
python manage.py check

Logging for UAT and Production Servers

If logging through syslog is implemented, you need to configure rsyslog.

nano /etc/rsyslog.d/30-ambition.conf

add this to the file

# /etc/rsyslog.d/30-ambition.conf
local7.*                                             /var/log/ambition.log
& ~  # This stops local7.* from going anywhere else.

restart rsyslog

sudo service rsyslog restart

view the log

tail -n 25 -f /var/log/ambition.log