bonohu

bonohu

Geek Repo

Company:Hiroshima University

Location:Higashi-Hiroshima, Hiroshima, Japan

Home Page:https://bonohu.github.io/

Twitter:@drbonohu

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bonohu's starred repositories

carbonyl

Chromium running inside your terminal

Language:RustLicense:BSD-3-ClauseStargazers:14210Issues:78Issues:120

gget

🧬 gget enables efficient querying of genomic reference databases

Language:PythonLicense:BSD-2-ClauseStargazers:869Issues:11Issues:58

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Language:CLicense:NOASSERTIONStargazers:623Issues:49Issues:1877

awesome-CRISPR

List of software/websites/databases/other stuff for genome engineering

RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language:PythonLicense:MITStargazers:439Issues:8Issues:174

alphafold_non_docker

AlphaFold2 non-docker setup

miniprot

Align proteins to genomes with splicing and frameshift

Language:CLicense:MITStargazers:305Issues:7Issues:55

pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Language:HTMLLicense:BSD-3-Clause-ClearStargazers:143Issues:13Issues:56

tokupon_ds

中高生向け「データ分析入門」資料

Language:RLicense:MITStargazers:56Issues:3Issues:5

2022_Haghighi_NatureMethods

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:45Issues:3Issues:12

plant-scripts

Scripting analyses of genomes in Ensembl Plants

Language:PerlLicense:Apache-2.0Stargazers:36Issues:18Issues:6

VIRTUS

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Language:Common Workflow LanguageLicense:NOASSERTIONStargazers:33Issues:5Issues:20

Interactive-Enrichment-Analysis

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

pathway-figure-ocr

Extracting gene sets from published pathway figures

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:15Issues:15Issues:33

python_de_textmining

『Pythonで学ぶテキストマイニング』

Language:Jupyter NotebookStargazers:9Issues:2Issues:0

schema-salad-d

Salad validator library written in D

Language:DLicense:Apache-2.0Stargazers:6Issues:3Issues:0

txt2gpml

Generate GPML (readable xml for WikiPathways) file from text file.

Language:PythonLicense:CC0-1.0Stargazers:5Issues:0Issues:0

CancerDAT

Support page for the Cancer Genome Data Analysis book

License:MITStargazers:5Issues:0Issues:0
Language:PythonLicense:MITStargazers:5Issues:0Issues:0

DANGER_analysis

Risk-averse on/off-target assessment for CRISPR editing without reference genome.

Language:ShellLicense:MITStargazers:4Issues:1Issues:0

moirai2

moirai2 source codes

Language:PerlStargazers:2Issues:0Issues:0

Hiroo2012

@ 広尾学園高等学校、Sep 15, 2012

Stargazers:1Issues:0Issues:0

taxr

TaXr: Taxonomy Explorer

Language:JavaScriptLicense:MITStargazers:1Issues:2Issues:11
Stargazers:1Issues:0Issues:0

HS_code

MIT License

Language:Jupyter NotebookLicense:MITStargazers:1Issues:2Issues:0