Beast code in Giters

Marc Jan Bonder's repositories

Complete pipeline to process Illumina 450K methylation data.

Language:R9 40

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

Language:JavaGPL-3.01 20

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Official code repository for GATK versions 4 and up

Language:JavaBSD-3-Clause000

Fast inference for Generalised Linear Mixed Models.

Language:PythonNOASSERTION020

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GTEx & TOPMed data production and analysis pipelines

Language:PythonBSD-3-Clause000

Kraken taxonomic sequence classification system

Language:C++GPL-3.0020

Linear mixed model for genomic analyses.

Language:PythonApache-2.0020

Language:PythonApache-2.0000

Tools for working with the LIMIX linear mixed modelling package.

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Diffferential distribution analysis of microbiome sequencing data

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Pipelines for NGS, imputation, gwas, ...

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MIT000

Parallel Colt is a multithreaded version of Colt.

Language:JavaNOASSERTION000

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Language:PythonGPL-3.0020

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

Language:Python000