Marc Jan Bonder's repositories
450K_DataProcessing
Complete pipeline to process Illumina 450K methylation data.
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
glimix-core
Fast inference for Generalised Linear Mixed Models.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
limix_tools
Tools for working with the LIMIX linear mixed modelling package.
MicrobiomeDDA
Diffferential distribution analysis of microbiome sequencing data
molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
ParallelColt
Parallel Colt is a multithreaded version of Colt.
qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
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