Bernie Pope's repositories

blip

A bytecode compiler for Python 3

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language-python

A parser for Python 2.x and 3.x written in Haskell

js-turtle

Turtle graphics in Javascript using HTML5 canvas

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haskell-mpi

MPI bindings for Haskell

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varlap

A tool aimed at quality control of DNA variants arising from sequencing alignments. It reports a suite of statistics about variants relating to their local alignment context in BAM files.

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gurita

A convenient and expressive tool for data analytics and plotting on the command line

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classify_sequencer

Try to detect DNA sequencing platform from read IDs

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asteroids

A clone of the asteroids game using the Pygame library

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binary_search_tree

Simple unbalanced binary search tree in Python

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coglabweb

Website for the Colorectal Oncogenomics Group

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pseudofinder

Find processed pseudogenes in DNA sequencing data using input structural variants

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snvly

Snvly is a tool aimed at quality control of DNA variants arising from sequencing alignments. It reports a suite of statistics about variants relating to their local alignment context in BAM files.

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website

My website

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bamreadid

Get the read ID of the first read in a BAM file

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bamreadlen

Calculate sequencing read length from a BAM file

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base_counter_invar

Base counter for INVAR sequencing

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BUSA90537_2023_project

Files for the BUSA90537 Coding for Business Problems project in 2023

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comut

CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

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cpython

The Python programming language

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INVAR2

restructures version of invar

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janis

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

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preceptweb

Website for the PRECEPT project

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stackage

"Stable Hackage": vetted consistent packages from Hackage

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