biothings / biothings_explorer

TRAPI service for BioThings Explorer

https://api.bte.ncats.io

biothings/biothings_explorer Issues

Pathfinder Prototype
Updated a month ago43
TRAPI 1.5: update SmartAPI yamls for BTE + Service Provider
Updated a month ago8
TRAPI 1.5: support source_record_urls
Updated a month ago7
TRAPI 1.5: add `"attributes": []` to NodeBindings, EdgeBindings, AuxGraphs
Updated a month ago1
TRAPI 1.5: new query property `bypass_cache`
Updated a month ago2
overview and management of TRAPI 1.5 features (excluding set_interpretation/MCQ)
Updated a month ago3
Bug: TypeError when there's no results for an Explain-style query
Updated a month ago
Finalize Typescript Migration of bte-server package
Updated a month ago
adding knowledge_level / agent_type (KL/AT) edge-attributes to all edges (Spring 2024 Translator feature)
Updated a month ago9
"treats refactor" aka update BTE and x-bte annotations to latest biolink-model (Spring 2024 Translator feature)
Updated a month ago7
TRAPI 1.5: update registrations for TRAPI KPs used
Updated a month ago3
Changing Creative mode threshold from results to time
Updated a month ago10
KP is returning a curie that wasn't asked for without a query id
Updated 2 months ago10
add `max research phase` to `treatsChembl` edges from mychem.info
Updated 2 months ago6
BTE is failing TRAPI 1.5 validation in CI
Closed 2 months ago4
TRAPI validation error in meta_knowledge_graph in Dev and CI for TRAPI 1.5
Closed 2 months ago2
error in subclass node expansion
Updated 2 months ago2
Feb 2024 - Remove overrides/changes that are no longer needed
Closed 2 months ago8
Remove temporary config changes (rolling deployment chore)
Updated 2 months ago1
For Multiomics/Text-Mining APIs, avoid merging records that only differ by their `edge.sources` contents
Closed 2 months ago7
adjust Node Norm urls and options?
Closed 2 months ago4
implement edge attribute constraints
Updated 2 months ago5
creative-mode "Explain-style" prototype for Pathfinder option (Translator Jan 2024 Relay)
Closed 3 months ago8
Handling local instance "port in use"
Updated 3 months ago1
TRAPI 1.5: set_interpretation/MCQ
Updated 3 months ago1
Improving Automated Test Harness Performance (Spring 2024 Translator feature)
Updated 3 months ago2
Compare x-bte Gene/Protein namespaces to NodeNorm behavior to operation predicates for discrepancies
Updated 4 months ago
adding more x-bte annotation for v3 Monarch API
Updated 4 months ago
adjust SmartAPI yaml, x-bte annotation for Biolink/Monarch API migration
Closed 4 months ago15
useful but not critical: ability to do "scrolling" GET queries with v3 Monarch API
Updated 4 months ago1
build automated testing suite for SmartAPI Registry uptime and contents, API_LIST APIs used, and `testExamples` x-bte annotation
Updated 4 months ago1
Implement a maximum batch size
Closed 4 months ago3
BTE occasionally fails to set TTL for cached qEdges
Closed 4 months ago2
SemMedDB not returning PMIDs on CI
Closed 4 months ago4
`resource_id` for `primary_knowledge_source` missing for TMKP edge on CI
Closed 4 months ago4
Recent queries in CI returning validation errors Service Provided SemMedDB attribute_type_ids
Closed 4 months ago5
Many subqueries using JQ fail with E2BIG
Closed 4 months ago2
problem retrieving asyncquery_response
Closed 4 months ago6
Multiple x-bte operations not working (records dropped during edge-management)
Closed 4 months ago10
bug: BTE misparsing Automat responses
Closed 4 months ago3
small bug: merging Multiomics drug response edges
Closed 4 months ago2
write SmartAPI yaml w/ x-bte annotation for BioThings HMDB
Updated 5 months ago
Review/update x-bte annotation for MyChem drugcentral.bioactivity
Updated 5 months ago
maybe write more specific operations for MyChem `chembl.drug_mechanisms` data
Updated 5 months ago
Investigate PFOCR options (strict, synonyms, all) for BTE use
Updated 5 months ago1
Using instance-equivalent pending BioThings APIs?
Updated 5 months ago3
All KG Edge source data is being mutated/removed from BTE's responses
Closed 5 months ago3
Investigating Creative Mode queries which nearly always go over time
Updated 5 months ago2
test alternate ordering of templates for Drug - treats - Disease creative mode query
Updated 6 months ago2
UI for writing x-bte annotations?
Updated 8 months ago