Compare x-bte Gene/Protein namespaces to NodeNorm behavior to operation predicates for discrepancies
colleenXu opened this issue · comments
I noticed that even when I set conflate=true, ENSP IDs like this seem to normalize as Protein and not Gene.
If this is intended behavior, I may want to review the Gene/Protein namespaces in x-bte annotation to the NodeNorm behavior to the operation predicate to see if they all line up. If they don't, I may need to set the operation to Protein and adjust the predicate to a non-Gene-specific one...
I'm thinking specifically of the BioThings DISEASES operations which is where I discovered this situation: Disease condition-associated-with-gene Gene, but the Gene is using Ensembl ENSP IDs which NodeNorm is saying are Proteins. I then don't know if the predicate makes sense.
Keep in mind what version of Nodenorm/options are being used: #787
Info from Chris Bizon:
Not every protein will have a gene that it conflates with, for some kind of odd reasons here and there. It's rare but it happens