Fábio Madeira's repositories
biomadeira.github.io
👨💻 Personal homepage
EBI-nextflow-config
EBI-wide Nextflow config file
edu
BioContainers Documentation.
shields
Concise, consistent, and legible badges in SVG and raster format
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
auto-traveler
Visualise RNA secondary structure using standard layouts
homebrew-biotools
Home for some bioinformatics homebrew formulae used in my work 🍺🔬
ebi-webservices-notebooks
Training material used in some EMBL-EBI courses
containers
Bioinformatics containers
bioconda-recipes
Conda recipes for the bioconda channel.
containers-rules-manuscript
Recommendations to contenarized your bioinformatics software
build-your-own-x
🤓 Build your own (insert technology here)
citation-network-explorer
Tool for exploring local citation networks.
r-novice-inflammation
Software Carpentry introduction to R for novices using inflammation data.
BioDownloader
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
dockerfiles
Docker Tools and Workflows
pyPDBeREST
A python wrapper for the PDBe REST API
rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
book-experiment
Experimental book using bookdown
Packt-Publishing-Free-Learning
Scripts that automatically claim and download free daily eBooks from https://www.packtpub.com/packt/offers/free-learning
rscripts
A bunch of R scripts for training/testing SNNS neural networks
jekyllthemes
A directory of the best-looking themes for Jekyll blogs
gae_pubmed2rss
Python code deployed to GAE
gae_papersetal
Python code deployed to GAE
gae_bib2yaml
Python code deployed to GAE
CodeReview
Python example program for Code Review (13.11.14)