- 2017-03-6 21:00, Yu-jian Kang
Here is a temporary package of CPC2.
- Pre-requisite:
a. Biopython package: a local version could be downloaded from http://biopython.org/wiki/Download
- Install
a. Unpack the tarball:
tom@linux$ gzip -dc CPC2-beta.tar.gz | tar xf -
b. Build third-part packages:
tom@linux$ cd CPC2-beta tom@linux$ export CPC_HOME="$PWD" tom@linux$ cd libs/libsvm tom@linux$ gzip -dc libsvm-3.18.tar.gz | tar xf - tom@linux$ cd libsvm-3.18 tom@linux$ make clean && make
- Run the predict
tom@linux$ cd
example: tom@linux$ bin/CPC2.py -i data/example.fa -o example_output
- Output result
Result in table format (delimited by tab): #ID peptide_length Fickett_score isoelectric_point ORF_integrity coding_probability coding_label
See the website for tutorial and more details. (http://cpc2.cbi.pku.edu.cn)
This is a beta version of CPC2, if have any questions please report to us.
Contact: cpc@mail.cbi.pku.edu.cn