biochunan

find_contacts_pymol_plugin

A PyMOL plugin to visualize interface residues

gen-ai-workshop

Learn how to build generative AI applications on AWS using PartyRock, Amazon Bedrock, and Amazon Q

langchaingo-amazon-bedrock-llm

Amazon Bedrock extension for langchaingo

fullstack-llm-langchain-chatbot-on-aws

Build a Full stack Q&A Chatbot with Langchain, and LLM Models on Amazon Sagemaker

elevating-customer-support-with-rag-langchain-agent-bedrock-dynamodb-and-kendra

amazon-bedrock-custom-langchain-agent

Learn to build custom prompts and tools for LangChain agents

rag-golang-postgresql-langchain

Implement RAG (using LangChain and PostgreSQL) for Go applications to improve the accuracy and relevance of LLM outputs

langchain-embeddings

Neural-Network-Architecture-Diagrams

Diagrams for visualizing neural network architecture (Created with diagrams.net)

pytorch-grad-cam

Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.

foldingdiff

Diffusion models of protein structure; trigonometry and attention are all you need!

ProteinWorkshop

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

particle

A simple portfolio Jekyll theme:

RFdiffusion

Code for running RFdiffusion

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

DLPacker

DLPacker

DiffDock-PP

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

MMDiff

Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion

drawio-desktop

Official electron build of draw.io

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

statannotations-tutorials

In this tutorial, we go over the features of statannotations

biohackathon-projects-2023

Project code for BioHackathon Europe 2023.

protein_bert

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

ESM-GearNet

ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)

gvp-pytorch

Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure

progen2

SEMAi

Spatial Epitope Modeling with Artificial intelligence (SEMA)

equifold

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation