bioboot

DSE260A-Immune-Response

cmi-pb_teaching

Educational Resources for the CMI-PB Project

r-pkgs

Building R packages

gpt-crawler

Crawl a site to generate knowledge files to create your own custom GPT from a URL

bookup-html

Bookup custom Quarto HTML format

gptstudio

GPT RStudio addins that enable GPT assisted coding, writing & analysis

map_align

Contact map alignment

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

learnr

Interactive Tutorials with R Markdown

QLMarkdown

macOS Quick Look extension for Markdown files.

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

r3dmol

🧬 An R package for visualizing molecular data in 3D

NGLVieweR

Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny

livecode

ggrepel

:round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.

staplr

PDF Toolkit. :paperclip: :hammer: :wrench: :scissors: :bookmark_tabs: :file_folder::paperclip: :bookmark: :construction: :construction_worker:

checkr

Checks code submissions in learnr (and potentially other) tutorials.

linl

Linl Is Not Letter -- Markdown-based LaTeX Letter Template

training-material

A collection of training material from offered Galaxy courses

gvl_commandline_utilities

Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.

janitor

simple tools for data cleaning in R

LiteMol

A library/plugin for handling 3D structural molecular data (not only) in the browser.

learn-to-send-email-via-google-script-html-no-server

:email: An Example of using an HTML form (e.g: "Contact Us" on a website) to send Email without a Backend Server (using a Google Script) perfect for static websites that need to collect data.

labsheet

R package for generating Rmarkdown based hands-on HTML worksheets utilized in Barry's Bioinformatics classes at UCSD

webex

RMarkdown tools for creating self-guided web exercises

rmarkdown-the-bigger-picture

Keynote slides for my talk R Markdown: The Bigger Picture at rstudio::conf 2019

mmtf-workshop-2018

Structural Bioinformatics Training Workshop & Hackathon 2018

bimm143_W18

Undergraduate Laboratory Course in Bioinformatics

goto

Alias and navigate to directories with tab completion in Linux

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js