Beth Cimini's repositories
HandyTools
Various tools for renaming files, working with LightCycler qPCR data, other tweaks
profiling-recipe
Image-based Profiling Recipe
bioimagebook.github.io
An introduction to bioimage analysis - http://bioimagebook.github.io
CellProfiler
An open-source application for biological image analysis
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
CellProfilerStats
Programs for turning Cell Profiler data into graphs and meaningful statistics
cytominer_database-feedstock
A conda-smithy repository for cytominer_database.
Distributed-FIJI
Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.
Distributed-Something
Run encapsulated docker containers that do something in the Amazon Web Services infrastructure.
Distributed-Something-1
Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.
distribution
Everything needed to build CellProfiler for your favorite environment.
homebrew-core
🍻 Default formulae for the missing package manager for macOS
jupyter-book
Create beautiful, publication-quality books and documents from computational content.
MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
profiling-handbook
Image-based Profiling Handbook
pycytominer
cytominer python package
pycytominer-feedstock
A conda-smithy repository for pycytominer.
python-javabridge
Python wrapper for the Java Native Interface
UNet_3D_C_elegans
3D segmentation of the C. elegans germ line