Alexander Berger (bergsalex)

bergsalex

Geek Repo

Company:@TheJacksonLaboratory

Location:United States

Home Page:https://www.jax.org/people/alexander-berger

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Alexander Berger's starred repositories

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polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

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logfire

Uncomplicated Observability for Python and beyond! 🪵🔥

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ffq

A tool to find sequencing data and metadata from public databases.

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geneweaver-aon

Ortholog/homolog mapping for Geneweaver

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rsvart

A re-implementation of svart in rust.

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geneweaver-db

The GeneWeaver database interaction code.

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uvicorn

An ASGI web server, for Python. 🦄

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geneweaver-api

A system for the integration and analysis of heterogeneous functional genomics data.

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ontology-annotation-network

A rest-api to serve a neo4j database of supported ontology annotations.

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geneweaver-core

The core library for GeneWeaver projects.

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tetragon

eBPF-based Security Observability and Runtime Enforcement

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geneweaver-client

A client library for the integration and analysis of heterogeneous functional genomics data.

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mkdocs

Project documentation with Markdown.

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black

The uncompromising Python code formatter

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ruff

An extremely fast Python linter and code formatter, written in Rust.

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schemathesis

Supercharge your API testing, catch bugs, and ensure compliance

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new-computer

An extremely opinionated and highly personalized script to set up a new Mac machine, just the way I like it!

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installme-osx

My personal script to setup a new OSX

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geneweaver-docs

Documentation site for the Geneweaver project.

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splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

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manticoresearch

Easy to use open source fast database for search | Good alternative to Elasticsearch now | Drop-in replacement for E in the ELK soon

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cs-nf-pipelines

The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines

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white-vest

White Vest is a project for collecting, logging, emitting, and visualizing telemetry from a model rocket containing an inboard Raspberry Pi Zero with an Arduino receiving telemetry.

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backoff

Python library providing function decorators for configurable backoff and retry

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