Ben Sherman's repositories
ml-toolkit
A collection of command-line wrappers of Python libraries for machine learning tasks
awesome-workflow
An awesome list of workflow systems
minecraft-server
A simple cloud-based wrapper for a Minecraft server with process management
nextflow-palmetto-demo
Creating and running Nextflow pipelines on Clemson's Palmetto cluster
pbs-toolkit
A collection of user scripts for a PBS/Tmod environment
bentsherman.github.io
My digital garden
codeflow
Flow graphs for your code
cuhackit2020
Jupyter notebook for Intro to Python workshop
fetchngs2rnaseq
Meta-pipeline for nf-core/fetchngs -> nf-core/rnaseq
GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
kinc-sketches
Experimental implementations of KINC in various languages and programming models
nf-float
MemVerge Netflow Plugin
nf-head-job-benchmark
Nextflow pipeline to benchmark Nextflow resource usage
nf-report
Nextflow plugin for generating an example report for workflow runs
nf-tests
Nextflow tests
nn-arch-tester
Python scripts for experimenting with neural net architectures
open-pixel-art
A collaborative pixel art project to teach people how to contribute to open-source
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sonn-tester
Python scripts for experimenting with self-organizing networks
vue2048
The 2048 game in Vue.js
xpack-amzn
AWS Xpack for Nextflow