SystemsGenetics

GEMmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

gene-oracle

Feature extraction algorithm for genomic data

KINC

Knowledge Independent Network Construction

kube-runner

A tool for running bioinformatics workflows on a Kubernetes cluster

FUNC-E

FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

EnTAPnf

Functional Annotation of Gene Lists

GEMprep

GSForge

A gene (feature) selection toolset for gene expression matrix (GEM) data.

granny

KINC.R

Supplemental R package for KINC

ACE

Accelerated Computational Engine (ACE) is a GPU-enabled framework to simplify creation of GPU-capable applications

GEM_Smasher

A gene expression matrix exploration tool set.

KINC-nf

Nextflow pipeline for KINC

transcript_corral

BioDepVis

pynome

Genome collection script for the SciDAS project.

awesome-feltus

A repository for how to be awesome in the Feltus lab

configs

Config files used to define parameters specific to compute environments at different Institutions

GSForgeDev

A placeholder repository for the dev version of the docs website.

irods-docker

Docker / Singularity image for using the iRODS client commands on HPC systems

KINC-v1-Singularity

Instructions for running KINC v1.0 using a Singularity Image

pynome-nf

Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.