bcli4d

jupyter_DeepPATH

A few little scripts to aid running DeepPATH in jupyter

caMicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

clean_radiology_metadata

Clean radiology metadata in BQ; replace NA/NA in ZipFileName with ca_type/patientID

copyRadiologyMetadataFiles

data-repository-service-schemas

A repository for the schemas used for the Data Repository Service.

dcmMetdata

dicomslide

Python library for reading whole slide images in DICOM format

dicomweb-client

Python client for DICOMweb RESTful services

extractMetadata

FlexTables

Tabular browsing of hierarchical REST APIs

ga4gh-drs-client

Retrieve omics data and metadata from DRS-compliant web services

gcsfuse

A user-space file system for interacting with Google Cloud Storage

gcsfuse-perf

gen_dzis

goofys

a high-performance, POSIX-ish Amazon S3 file system written in Go

IDC-API

Google Endpoints API providing programmatic access

iipsrv

iipsrv-curl

Fork of https://bitbucket.org/tcpan/iipsrv.git with support for accessing remote files

jclouds-examples

Read-only mirror of ASF Git Repo for jclouds examples

openslide

openslide-python

Python bindings to OpenSlide

PathDB

quip_distro

readthedocs

Documentation for the ISB-CGC on Read the Docs.

SlicerIDCBrowser

tcia_transfer

Extract files from TCIA to GS

thumbnails

uploadHeatmaps

ViewerDockerContainer

Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages