Imaging Data Commons

highdicom

High-level DICOM abstractions for the Python programming language

slim

Interoperable web-based slide microscopy viewer and annotation tool

dicomweb-client

Python client for DICOMweb RESTful services

dicom-microscopy-viewer

Web-based DICOM slide microscopy viewer library

IDC-Tutorials

Self-guided notebook tutorials to help get started with using IDC

libdicom

C library for reading DICOM files

idc-index

Python package to simplify access to the data available from NCI Imaging Data Commons

pyplastimatch

Python wrapper for Plastimatch.

IDC-WebApp

Web Application front end for IDC (CORE REPO)

IDC-Docs

Source for IDC documentation

idc-prostate-mri-analysis

idc-wsi-conversion

(CORE REPO)

s5cmd-python-distributions

This project provides the infrastructure to build s5cmd Python wheels.

etl_flow

(CORE REPO)

SlicerIDCBrowser

A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

CloudSegmentator

Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

idc-comppath-reproducibility

Classification of lung tumor slide images with the NCI Imaging Data Commons

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)

CloudSegmentatorResults

dcmqi-python-distributions

idc-index-data

Python package providing the index to query and download data hosted by the NCI Imaging Data Commons

github_analytics

Scripts for monitoring and archival of GitHub insights for IDC-related repositories

IDC-API

Google Endpoints API providing programmatic access (CORE REPO)

IDC-Common

Shared code between repositories (CORE REPO)

idc-dicom-seg-conversions

Examples for converting prostate MRI-US-Biopsy STL prostate and lesion surfaces to DICOM SEG and DICOM STL.

idc-slim

Interoperable slide microscopy viewer for thin clients (CORE REPO)

idc-sm-annotations-conversion

idc-viewers-sandbox-gha-testing

isbi_tutorial_2024

ViewersV3

OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)