baumgach

PHiSeg-code

Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019

acdc_segmenter

Public code for our submission to the 2017 ACDC Cardiac Segmentation challenge

vagan-code

Tensorflow implementation of 'Visual Feature Attribution using Wasserstein GANs'

tue-slurm-helloworld

Instructions and examples to deploy some PyTorch code on slurm using a Singularity Container

SonoNet-weights

Model descriptions and weights for all the variations of the SonoNet for real-time fetal standard scan plane detection.

image-sorter

Small project for sorting images in a folder into a number of label categories which can be specified by the user.

ShoreditchBoulderTopo

Topo for the Boulder in Shoreditch Park

artistic-style-transfer

Implementation of the artistic style transfer paper by Gatys et al. using the Lasagne framework.

baumgach.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

vtkTools

C++ tools for performing various kinds operations on vtk files of brain fibers extracted using Tracography

gpu_speed_test

scribble_annotator

Basil's MATLAB GUI to read in niifti/HDF5 files and create weak supervision annotations (scribbles)

vtk2mask

C++ tools for converting VTK models to masks

BackgroundGenerator

Simple class for preprocessing minibatches in a separate background thread

basil_scribble_supervision

Basil's internship work on scribble supervision

chaksu-classifier

A ResNet for classifying Chaksu into glaucoma suspect and not glaucoma suspect

Chexpert

Top 1 solution of Chexpert

ddsm-saliency

debug-davids-code

discriminative_learning_toolbox

ged

Efficient implementation of generalised energy distance for samples of 2D (numpy) arrays

l2l-example

This is an example for how to prepare a valid submission for the MICCAI L2L Challenge

making-better-mistakes

midl-openreview-scripts

A number of scripts to access papers and reviews through the Openreview Python API

ralis

Code for the paper "Reinforced Active Learning for Image Segmentation"

replicate-chexpert-results

scribble_segmentation

Yigit's DLMIA scribble segmentation code

tue-slurm

Utility for working with Uni Tübingen Slurm Cluster

Visual-Feature-Attribution-Using-Wasserstein-GANs-Pytorch

Implementation of Visual Feature Attribution using Wasserstein GANs (VAGANs, https://arxiv.org/abs/1711.08998) in PyTorch