Biomedical Image Analysis Group

MIRTK

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

IRTK

The Image Registration Toolkit

dhcp-structural-pipeline

structural analysis of neonatal brain MRI scans

deepali

Image, point set, and surface registration in PyTorch.

dHCP-release-notes

Notes for the dHCP data release

python-irtk

Cython based wrapper for IRTK

poster-templates

BioMedIA's poster templates used for conferences

irtk-refactored-deprecated

slurm-formula

Salt configuration for a BioMedIA's Slurm cluster

openmole-workflows

Workflows and archives for the Frontiers 2016 paper "Reproducible large-scale neuroimaging studies with the OpenMOLE workflow management system"

ansible-xnat

Ansible playbook for automated creation of XNAT build environment

conda-recipes

UKBB-GNC-Abdominal-Segmentation

Abdominal Organ Segmentation of UK Biobank and GNC Studies

UKBB-GNC-QC-Tool

xnat-plugins

Custom XNAT plugins for the dHCP project