Beast code in Giters

Bioinformatics Lab - Department of Computer Science - University Freiburg's repositories

IntaRNA

Efficient target prediction incorporating accessibility of interaction sites

Language:C++NOASSERTION44 10 138

RNA-Playground

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

Language:JavaScript34 5 13

CRISPRidentify

Language:PythonMIT21 6 17

CRISPRloci

Language:Python13 7 8

RNAProt

Modelling RBP binding preferences to predict RPB binding sites

Language:PythonMIT9 5 4

DeepAcr

Language:Python4 7 4

BioNetViz

An integrated graph system of biological entities, functional terms, and publications.

Language:VueGPL-3.0100

LatPack

Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions

Language:C++MIT1 5 1

MutARNA

Language:Jupyter Notebook1 90

RBPBench

Language:Python1 90

B1_01_biology-basics

Language:PythonGPL-3.0000

B1_02_edit-distance

Language:PythonGPL-3.0020

B1_03_align-linear-gap

Language:PythonGPL-3.0000

B1_04_align-affine-gap

Language:PythonGPL-3.0020

B1_05_align-local

Language:PythonGPL-3.0000

B1_08_PAM

Language:PythonGPL-3.0000

B1_09_align-msa

Language:PythonGPL-3.0000

B1_10_tree-UPGMA

Language:PythonGPL-3.0000

B2_00_intro_to_classroom

Language:PythonGPL-3.0040

B2_01_hidden_markov_models

Language:PythonGPL-3.0050

B2_06_BLAST

Language:PythonGPL-3.0000

B2_10_intro_mapping

Language:PythonGPL-3.0000

BackofenWeb

Github Pages Repository for the BackofenLab Group Page

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BioinformaticsI-pages

Language:JavaScript070

BioinformaticsII-pages

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Cherri

Language:PythonGPL-3.005 31

LocARNA_consensus_constraint

Language:RMIT000

Long_Range_RNA_Interactions

Genomic long range RNA-RNA interactions in flaviviruses

Language:Python000

Optimierung-pages

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V_RNA-pages

Language:JavaScript000