Bioinformatics Lab - Department of Computer Science - University Freiburg's repositories
CPSP-tools
Constraint-based Protein Structure Prediction tools.
Casboundary
Automated definition of integral CRISPR/Cas cassettes.
MLLS-exercise-SS22
Example solutions for the 'Machine learning in life sciences' course SS22
BrainDead
BrainDead - RNA classification via accessible k-mers
biofilm
make it easy to generate a FILtering Models for BIOlogical data
CLIPcontext
Extract CLIP-seq binding regions with both genomic and transcript context
natto
single cell
GraphClust-2
A pipeline for structural clustering of RNA secondary structures
GraphProt2
Modelling RBP binding preferences to predict RPB binding sites
ExpaRNA
Find the longest common subsequence of exact pattern matchings of two RNAs
CRISPRcasIdentifier
Machine learning for accurate identification and classification of CRISPR-Cas systems
phones-and-conference-calls
How to use the phone conferencing room
EDeN
Explicit Decomposition with Neighborhoods python version
AlgorithmAndDatastructures-Material
Slides for Algorithms and Datastructure lecture for IEMS/ESE
GeneralizedCoarseGraining
Generalized Coarse Graining (GCG) enables the recursive coarse graining of discrete energy landscapes
IntaRNA-benchmark
Data and scripts to benchmark IntaRNA
SalamiSnake
Snakemake Piepline for CLIP data