avisemler / Phylogeny

Contructs bifurcating phylogenetic trees from data that has an associated distance function, e.g. protein or DNA sequences

Repository from Github https://github.comavisemler/PhylogenyRepository from Github https://github.comavisemler/Phylogeny

Phylogeny

Contructs bifurcating phylogenetic trees from data that has an associated distance function

Example

For the input sequence of integers 625, 390, 400, 410, 605 and distance function 'distance(x,y)=|x-y|', the following tree is outputted:

Node
 |_ Node
     |_ 410
     |_ Node
         |_ 390
         |_ 400
 |_ Node
     |_ 625
     |_ 605

Todo

  • Add distances to the visualisation

About

Contructs bifurcating phylogenetic trees from data that has an associated distance function, e.g. protein or DNA sequences

License:Apache License 2.0


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Language:Python 100.0%