Andrei Zinovyev's repositories
ClinTrajan
Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets
Elastic-principal-graphs
Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
FisherSeparabilityAnalysis
Data point cloud separability analysis based on linear Fisher discriminants
VDAOEngine
Java library for unsupervised data analysis methods, including modifications and extensions of PCA such as ICA, principal manifolds and graphs
auranic.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
BIODICA
"Independent Component Analysis of BIg Omics Data"
DANN
Keras implementation of Domain-Adversarial Training of Neural Networks (DANN)
ElPiGraph.P
Python implementation of the Elastic Principal Graph algorithm with multi-cpu and gpu support
EwingSingleCellDataAnalysis
Code accompanying the manuscript "Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution"
exact-stoch-log-mod
ExaStoLog: a MATLAB toolbox for EXAct calculation of STOchastic LOGical models
HACK
Hierarchical approach to Stabilised Independent Component Analysis
Intrinsic-Transcriptome-Dimension
Computational methodology for estimating the intrinsic dimensionality of transcriptomic data, including single cell RNASeq data
lab-agile-planning
his repository contains the lab for agile planning
LizardBrain
LizardBrain - structure of a data point cloud which is locally simple, globally complex
Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
MaBoSS-env-2.0
MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.
NaviCell
A web tool for exploring large maps of molecular interactions
PhysiBoSS
Multiscale simulation of multi-cellular system
ProteinTranslationModels
Basic, simple and extendable modeling of protein synthesis
scikit-dimension
A Python package for intrinsic dimension estimation
scycle
Cell cycle pseudotime in single-cell RNA-seq
transmorph
Optimal transport-based data integration
WebMaBoSS
A web interface for MaBoSS modeling
WikiPedia-Protein-Relations
Functional relations between proteins extracted from WikiPedia