salmonella_methylation_pipeline
SMP: A Salmonella enterica subsp. enterica Methylation Analysis Pipeline
How to operate the salmonella methylation pipeline:
- Deposit sequencing data into the /sequencing_data directory
- Modify serovar.design.tsv and setup.design.tsv in the \info directory
- Deposit reference genomes and reference annotations
- Run all scripts in \scripts in order, \scripts\bash_script_generator generates missing scripts