atongsa's repositories
convergency_sv
the scripts used for the SV convergency paper "Structural variant landscapes reveal convergent signatures of evolution in sheep and goats".
FALCON_unzip
Making diploid assembly becomes common practice for genomic study
ABC_TimeAdapt
TimeAdapt makes a joint inference of demography and selection from longitudinal population genomic data. The inference is based on approximate Bayesian computation via random forest. It takes whole genome data and information about the ages of samples to perform simulations (using SLiM + pyslim/msprime).
Augustus
Genome annotation with AUGUSTUS
bilibili-link-grabber
A CLI script that grabs all video URLs on certain BiliBili pages and writes it into a csv file. The csv file can be used by youtube-dl and annie to download all the video links in the csv file.
cv
atongsa's academic CV in LaTeX
ffq
A tool to find sequencing data and metadata from public databases.
HaploNet
Haplotype and population structure inference using neural networks.
IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
nextflow-tutorial
Nextflow training material for introductory tutorial
nf-co.re
Code and files for the main nf-core website.
pml-book
"Probabilistic Machine Learning" - a book series by Kevin Murphy
smcpp
SMC++ infers population history from whole-genome sequence data.
source-han-serif
Source Han Serif | 思源宋体 | 思源宋體 | 思源宋體 香港 | 源ノ明朝 | 본명조
tskit
Population-scale genomics
ucas_down
Rmarkdown template for UCAS PhD thesis (University of Chinese Academy of Sciences)
ucasthesis
[最新样式] **科学院大学学位论文 LaTeX 模板 LaTeX Thesis Template for the University of Chinese Academy of Sciences
unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans