asntech

postdoc-funding-schemes

Funding schemes and travel grant opportunities for postdocs

intervene-shiny

An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps

improse

Integrated workflow to predict super-enhancers and compute feature importance

RandomLuck

RandomLuck: a totally random winner picker

my_lib

Various publications I've collected on process science, history, etc.

survivalPredictor

survivalPredictor for Mini-challenge of NORBIS course on Prediction (in Molecular Biology)

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-expectations

Examples of great academic lab expectations, manuals, policies for joining and being in the lab

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

COVID19-flyers

Informative flyes on COVID-19

FAIR-biomed

Browser extension for accessing open data resources in the biomedical domain

genomicspapers

The Leek group guide to genomics papers

hugo-academic

The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:

InterveneApp

JASPAR-1

JASPAR2020 data package

matplotlib_for_papers

Handout for the tutorial "Creating publication-quality figures with matplotlib"

phpDAVIDws

A class-based PHP platform for DAVID web services

Providers

A Collection of Providers for Laravel Socialite

pure-sh-bible

📖 A collection of pure POSIX sh alternatives to external processes.

pyclone

Probabilistic model for inferring clonal population structure from deep NGS sequencing.

pydp

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

scripts

General scripts used in the lab. Almost all of them are in core perl, i.e require no modules that don't already come with a perl installation. These script are currently in use by the Lab, so expect full support. This material is based upon work supported by the National Science Foundation under Grant Number EAR-1035955. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

summerR_2015

Introduction to R for Public Health Researchers - Summer 2015

TeachingMaterial

RNA-seq data analysis practical

ten-rules

Ten simple rules for better figures

tools

tsinghua-thesis-csl

Tsinghua University Thesis CSL

web-api

API serving data from rxivist database enhanced with the low visibility Shadow Index.