Arun Durvasula's repositories
angsd-wrapper
A project for extending ANGSD
coverage-depth-assembly
Experiement looking at how widely different coverage affects viral assemblies
at-scripts
Helper scripts for dealing with various file conversions etc.
FPS-repository
A place for hopefully well documented scripts related to assembly, blast, and others
Maize-Background-Selection-Simulations
A pipeline for both forward and coalescent simulations of background selection during maize domestication on Slurm
angsd-wrapper-paper
Manuscript!
archie2
better
assembler-compare-old
A script to compare assemblers using metrics from the Assemblathon papers
CV
Curriculum Vitae
Dom_Bot
Parameterize the maize domestication bottleneck
domestication_sims
A simulation pipeline for maize domestication
fps-cluster-guide
A guide to using the Farm cluster for Foundation Plant Services
fwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
GRFP
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
libsequence
libsequence: a C++ class library for evolutionary genetic analysis
logthat
A program that remembers what you did to your data so you don't have to
shiny-distributions
An R-shiny application to plot distributions and play around with parameters
stdpopsim
A library of standard population genetic models