arundurvasula

angsd-wrapper

A project for extending ANGSD

frydomics

A journal club for -omicsy things @ UCLA

angsbigd

angsd reanalysis of maize HM3 data

coverage-depth-assembly

Experiement looking at how widely different coverage affects viral assemblies

GDB-sim

A shiny application that simulates plant disease spread on a 25x25 grid

at-scripts

Helper scripts for dealing with various file conversions etc.

FPS-repository

A place for hopefully well documented scripts related to assembly, blast, and others

Maize-Background-Selection-Simulations

A pipeline for both forward and coalescent simulations of background selection during maize domestication on Slurm

angsd-wrapper-paper

Manuscript!

archie2

better

arundurvasula.github.io

assembler-compare-old

A script to compare assemblers using metrics from the Assemblathon papers

assembler_compare

aw-mer

CV

Curriculum Vitae

Dom_Bot

Parameterize the maize domestication bottleneck

domestication_sims

A simulation pipeline for maize domestication

dominance

fps-cluster-guide

A guide to using the Farm cluster for Foundation Plant Services

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations

gal_bal

GRFP

Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.

gwas_rmd

GxE

Scripts for Durvasula and Price 2024

logthat

A program that remembers what you did to your data so you don't have to

migration

missense

reovirus-NGS-analysis

shiny-distributions

An R-shiny application to plot distributions and play around with parameters

stdpopsim

A library of standard population genetic models