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B. Arman Aksoy (armish)

armish

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Location:Bedford, MA

Home Page:https://arman.aksoy.org

Twitter:@armish

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hammerlab
obsidiantx

B. Arman Aksoy's starred repositories

dandelion

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

Language:Jupyter NotebookLicense:AGPL-3.0Stargazers:91Issues:0Issues:0

tangermeme

Biological sequence analysis for the modern age.

Language:PythonLicense:MITStargazers:140Issues:0Issues:0

gganatogram

Create anatograms using ggplot2

Language:RStargazers:371Issues:0Issues:0

metagraph

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Language:C++License:GPL-3.0Stargazers:103Issues:0Issues:0

blueycolors

Provides bluey-inspired color palettes and ggplot2 scales

Language:RLicense:NOASSERTIONStargazers:6Issues:0Issues:0

CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

Language:RLicense:GPL-3.0Stargazers:80Issues:0Issues:0

GWalkR

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

Language:TypeScriptLicense:Apache-2.0Stargazers:159Issues:0Issues:0

RFdiffusion

Code for running RFdiffusion

Language:PythonLicense:NOASSERTIONStargazers:1527Issues:0Issues:0

git-filter-repo

Quickly rewrite git repository history (filter-branch replacement)

Language:PythonLicense:NOASSERTIONStargazers:7627Issues:0Issues:0

rf_diffusion_all_atom

Public RFDiffusionAA repo

Language:PythonLicense:NOASSERTIONStargazers:241Issues:0Issues:0

human

Language:Jupyter NotebookStargazers:34Issues:0Issues:0

llm.c

LLM training in simple, raw C/CUDA

Language:CudaLicense:MITStargazers:20509Issues:0Issues:0

OncLLMExtraction

Expert-Curated Oncology Reports to Advance Language Model Inference

Language:PythonLicense:NOASSERTIONStargazers:23Issues:0Issues:0

seqNdisplayR

Produce reproducible, pretty genome coverage plots using highly customizable layout and coverage normalization, batch correction etc.

Language:RLicense:NOASSERTIONStargazers:6Issues:0Issues:0

deepprofile-study

Code for paper "A deep profile of gene expression across 18 human cancers"

Language:Jupyter NotebookLicense:MITStargazers:4Issues:0Issues:0

qupath

QuPath - Bioimage analysis & digital pathology

Language:JavaLicense:GPL-3.0Stargazers:981Issues:0Issues:0

bioformats2raw

Bio-Formats image file format to raw format converter

Language:JavaLicense:GPL-2.0Stargazers:75Issues:0Issues:0

conda-bioformats2raw

Bio-Formats image file format to raw format converter

Language:BatchfileStargazers:5Issues:0Issues:0

starfysh

Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:84Issues:0Issues:0

kay

Language:PythonLicense:MITStargazers:108Issues:0Issues:0

garnet

Garnet is a remote cache-store from Microsoft Research that offers strong performance (throughput and latency), scalability, storage, recovery, cluster sharding, key migration, and replication features. Garnet can work with existing Redis clients.

Language:C#License:MITStargazers:9610Issues:0Issues:0

XT-neighbor

Language:Jupyter NotebookLicense:MITStargazers:3Issues:0Issues:0

pyrepseq

Python library for immune repertoire analysis

Language:PythonLicense:MITStargazers:15Issues:0Issues:0

conferences

Stargazers:1Issues:0Issues:0

aici

AICI: Prompts as (Wasm) Programs

Language:RustLicense:MITStargazers:1805Issues:0Issues:0

rosetta

The Rosetta Bio-macromolecule modeling package.

Language:C++License:NOASSERTIONStargazers:75Issues:0Issues:0

constructive

Display Idiomatic Code to Construct Most R Objects

Language:RLicense:NOASSERTIONStargazers:104Issues:0Issues:0

immunotherapy_scRNAseq_papers

Stargazers:11Issues:0Issues:0

maxfuse

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:36Issues:0Issues:0

escape

Easy single cell analysis platform for enrichment

Language:RLicense:MITStargazers:122Issues:0Issues:0