Armin Töpfer's repositories
haploclique
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
bam-io-throughput
BAM I/O Throughput Benchmark
ggeyecandy
Various R scripts to generate appealing data visualizations
BAMExtract
Extracts regions from a bam file and exports as in sam format
PrimerIDTK
Toolkit for PrimerID NGS experiments
profilesim
Creating profiles for SimSeq from BAM alignments and a set of reference genomes.
seqalfixer
SequenceAlignmentFixer, a multitude of alignment statistics and fixes for Next Generation Sequencing (NGS) data. Computes consensus sequence with in-frame deletions and insertions.
GenomeWorks
SDK for GPU accelerated genome assembly and analysis
just-the-docs
A modern, high customizable, responsive Jekyll theme for documention with built-in search.
OligoMatcher
OligoMatcher finds all genes, which are target of an oligo.
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data