armaneshaghi

DCMPy

Python module for longitudinal surface-based DCM of fMRI data

trained_models_MS_SuStaIn

Trained models for the MS SuStaIn paper

AsynDGAN

AsynDGAN project source code.

autoprognosis

A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.

brain-coloring-website

BrainPainter Website code

causalTrialModel

Manuscript codes with fake data simulation

citation-gates

code to generate passage of citations through animated reproducibility gates

deeplearning-models

A collection of various deep learning architectures, models, and tips

DeepReg

Medical image registration using deep learning (under development)

dinov2

PyTorch code and models for the DINOv2 self-supervised learning method.

genomics-secondary-analysis-using-aws-step-functions-and-aws-batch

This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch.

istn

Image-and-Spatial Transformer Networks

kwyk

Knowing what you know - Bayesian brain parcellation

lab2im

Library for generating images by sampling a GMM conditioned on label maps

MONAI

AI Toolkit for Healthcare Imaging

nipype_codes_ipmsa

phinet

Classifying modalities in magnetic resonance brain imaging

Pizarro-et-al-2018-DL-identifies-MRI-contrasts

progressive_growing_of_gans

Progressive Growing of GANs for Improved Quality, Stability, and Variation

pySuStaIn

Python translation of the Subtype and Stage Inference (SuStaIn) model, including an example using simulated data.

QuickNATv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

Recursive-Cascaded-Networks

[ICCV 2019] Recursive Cascaded Networks for Unsupervised Medical Image Registration

sae

An Auto-Encoder Strategy for Adaptive Image Segmentation (SAE)

stan-vim

A Vim plugin for the Stan probabilistic programming language.

stanford_alpaca

Code and documentation to train Stanford's Alpaca models, and generate the data.

sunrise

surface_tools

Tools for mesh surface-based operations

torchio

Tools for loading, augmenting and writing 3D medical images with PyTorch.

TrainedSuStaInModels

Repository of Trained SuStaIn models

wmhchallenge

Example docker containers for the WMH Segmentation Challenge