Antônio Camargo's repositories
prodigal-gv
A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
magpurify2
Identify and remove contaminants from metagenome-assembled genomes
bioinformatics-snakemake-pipelines
Collection of Snakemake pipeline for commin bioinformatics tasks
genomad-annotate-module-snakemake
A snakemake workflow implementing the genomad annotate module steps
pykofamsearch
Fast implementation of KofamScan optimized for high-memory systems using PyHmmer
pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
bioconda-recipes
Conda recipes for the bioconda channel.
cmap
Scientific colormaps for python, with only numpy dependency
cobra.github.io
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
cookiecutter-polars-plugins
Project template for Polars Plugins
localcolabfold
ColabFold on your local PC
MaternalBound-Redux
A new version of MaternalBound, complete with New Controls and MSU-1 integration... And a lot more features!
PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
pycountry-feedstock
A conda-smithy repository for pycountry.
rnasamba-webapp
RNAsamba webapp
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tspex-webapp
tspex webapp