antismash / antismash

antiSMASH

https://antismash.secondarymetabolites.org

antismash/antismash Issues

Error: could not parse records from GFF3 file
Updated 2 months ago6
Antismash RuntimeError
Closed 3 months ago1
docker run problem
Updated 3 months ago1
Record xxx contains no genes bug when parsing gbk file
Closed 3 months ago1
Question about fungal mode
Closed 5 months ago1
Genbank SMILES qualifier has extra space for long products
Closed 5 months ago2
Completely include (or exclude) features sitting on the edge of a candidate cluster
Updated 5 months ago13
Local antiSMASH and web server showed different Cluster blast results.
Updated 5 months ago1
https://dl.secondarymetabolites.org/ seems to be down, unable to curl docker image
Closed 5 months ago1
Job Submission Failed
Closed 5 months ago1
Can I only run comparison algorithm?
Closed 6 months ago
Some protoclusters in a "neighbouring candidate cluster" don't belong to anyone of the other kinds of candidate clusters
Closed 6 months ago2
error during antismash7 install - "ERROR: Could not build wheels for ..."
Updated 6 months ago10
blastp -> ['Error: The sequences are expected to be proteins but only contain DNA letters.
Closed 7 months ago1
Error：pip install antismash-7.1.0
Closed 7 months ago6
Some terpene synthases missed.
Updated 7 months ago
Possibility to disable auto-scroll on ORF click
Closed 8 months ago2
Broken links in compaRiPPson results - missing version
Closed 8 months ago
too many problem of python package "biopython"
Closed 8 months ago6
Malformed record in ClusterBlast database
Closed 8 months ago1
Remove outdated SearchGTr
Closed 8 months ago
run_antismash script points to non-existant docker image
Closed 9 months ago1
Augustus Gff parser issue
Updated 9 months ago3
antismash-db 3 ClusterCompare db
Closed 10 months ago
Genbank corrupts contig ID in antiSMASH v6.1.1
Closed 10 months ago11
Error 'could not parse records from GFF3 file' from web-based antismash fungal version
Closed 10 months ago2
Installled v7.0.1 but "antismash --version" outputs 6.0.0
Closed 10 months ago3
Question about calculating similarity score
Closed a year ago
Knownclusterblast didn't get expected hits from MIBiG using E.coli nissle 1917 genome as a test
Updated a year ago6
How can results for NRPS/PKS products be obtained in the command-line version?
Closed a year ago5
RuntimeError: diamond failed to run: blastp -> d, or a system-imposed limit on the number of threads was encountered.
Closed a year ago3
antismash-7.0 diamond fails makedb during download-antismash-database
Closed a year ago1
Will the meme module fail to install and affect the subsequent use?
Closed a year ago1
Antismash 7.0.0 docker compiled with avx2/avx512 requirement?
Closed a year ago3
ValueError: Equivalence group contains unknown identifiers
Closed a year ago6
antismash runtime error hmmscan
Closed a year ago2
Exec format error: '/opt/conda/bin/hmmpress' when running download-antismash-databases
Closed a year ago1
Conda Installation issue
Closed a year ago2
Security Issue Report
Closed a year ago2
download-antismash-databases is too slow to download
Closed a year ago1
meme installation dependency package does not work for python >= 3.9, and downloading the latest version does not work either.
Closed a year ago1
from numpy.core._multiarray_umath import
Closed a year ago3
RuntimeError: Output directory contains other files, aborting for safety
Closed a year ago
Similarity scores calculation using info from contig txt files
Closed a year ago
"Sideloaded Area Contains No Complete CDS Feature" message during antiSMASH v7 command line job
Closed a year ago2
If antiSMASH is suitable for plant genome
Closed a year ago
Requires requests of cblaster, launchpad and lazr-restfulclient
Closed a year ago1
error building databases
Closed a year ago
Wrong docker script on secondarymetabolites.org
Closed a year ago2
Nucleotide sequence changes in BGC GenBank relative to genome
Closed a year ago2