Error：pip install antismash-7.1.0
qkqk-hub opened this issue · comments
Hello, I had an error while installing antismash.
When I execute pip install antismash 7.1.0.
The error is as follows:
ERROR: Could not find a version that satisfies the requirement antismash-7.1.0 (from versions: none)
ERROR: No matching distribution found for antismash-7.1.0
My version of python is : 3.9.18
My version of pip is : 23.3.1
Should I change the pip version?
Or what should I do?
Thank you for your reply
There is no antiSMASH package on pypi, which is why pip can't find it.
See https://docs.antismash.secondarymetabolites.org/install/ for manual installation details.
Thank you for your prompt reply
I refer to this https://docs.antismash.secondarymetabolites.org/install/#installing-the-latest-antismash-release
It's mentioned here:pip install ./antismash-6.0.0,But I got an error when using pip install./antismash-7.1.0.
Is it because my pip version is wrong?
I have used pip install ./antismash-7.1.0 successfully, but I forget the pip version at the time
The version of your pip is irrelevant.
The ./ at the beginning is important, it means that it's looking for a directory named antismash-7.1.0 in the current directory.
If you leave the ./ (or rest of the local path, if applicable) out, then it looks on https://pypi.org/, where there isn't a package.
Thank you very much, I have successfully downloaded and used antismash.
Thank you again for your patient guidance!
By the way, If I don't want to see the results through index.html, where else can I see all the results?Or are there any commands that can generate results in non-web form?
My running code is as follows:
antismash HRGM_Genome_1283.fna --genefinding-gff3 HRGM_Genome_1283.fna.gff --output-dir ../result2/
The results are as follows:
The HTML is the visual output.
The JSON is the machine readable output.
The GBK(s) are the default genome viewer style outputs, but do not contain all the information in the other two options.
Ok, thank you very much. I'll interrupt again if there are any other questions. Thank you！