anpefi / tumopp

Tumor growth simulation in C++

tumopp

Tumor growth simulator in C++.

Dependencies

• Unix-like OS (macOS, Linux, etc.)
• C++14 compiler
• CMake
• Boost C++ Libraries
• sfmt-class
• cxxwtl

Installation

git clone https://github.com/heavywatal/tumopp.git
mkdir build-tumopp
cd build-tumopp/
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/local ../tumopp
make
make install

Usage

Run tumopp in R via tumorr package

Reference

Watal M. Iwasaki and Hideki Innan (2017) "Simulation Framework for Generating Intratumor Heterogeneity Patterns in a Cancer Cell Population" bioRxive preprint