anpefi / msap

The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

anpefi/msap Issues

Pairwise PhiST: Error in FUN(X[[i]], ...) : 'bin' must be numeric or a factor
Updated a year ago1
Allow for different methilation patterns for different combinations on enzymes
Closed 5 years ago1
Allow user-defined threshold for occurrences to define a MSL or NML as polymorphic
Closed 5 years ago
Simplify the output of PhiST
Updated 6 years ago
Recomend the usage of sink() to deal with the outputs
Updated 5 years ago1
Mantel test fails if do.cluster=FALSE
Closed 5 years ago1
Add plot for Mantel test (MSL vs. NML)
Updated 7 years ago
Deal with missing data in the input files
Updated 7 years ago
Error in which(PolyM) : argument to 'which' is not logical
Closed 5 years ago1
Add Sannon Index for standard AFLP analysis
Closed 5 years ago
Integrar el código de Walter Durka
Closed 8 years ago
Subir al CRAN
Closed 8 years ago
Test de Mantel con fichero de coordenadas geográficas.
Closed 8 years ago
Añadir análisis single-loci
Closed 8 years ago
Issue 6262: Error in nj(DM_copy) : missing values are not allowed in the distance matrix Consider using njs()
Closed 8 years ago
Check changes in dependences
Updated 8 years ago
Error in nj(DM_copy) : missing values are not allowed in the distance matrix Consider using njs()
Updated 5 years ago2
Complete the migration from R-Forge and made a new Readme and a new site
Closed 9 years ago