Giters
andersgs
/
kraken-trawl
A tool to help create custom `kraken` databases
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Issues:
15
Forks:
3
andersgs/kraken-trawl Issues
Add an example to README.md
Updated
7 years ago
Comments count
3
Using $HOME/bin versus $HOME/.local/bin
Closed
8 years ago
Comments count
3
assembly_summary_genbank.txt has `na` for some assemblies in the `ftp_path` column, which causes the script to fail
Closed
8 years ago
Keep aspera file manifest data as a log
Closed
8 years ago
Parallel add genomes to kraken staging area?
Updated
8 years ago
Document and wire in test
Updated
8 years ago
Make pip installable
Closed
8 years ago
Add automatic injection of Illumina adapters into DB.
Closed
8 years ago
Add functionality to download latest taxonomy files when creating a new database.
Closed
8 years ago
Add functionality to download latest assembly summary genbank file
Updated
8 years ago
Comments count
1
Add refweak blacklist
Updated
8 years ago
Add some of Kai Blin's ncbi-genome-download functionality
Updated
8 years ago
Use `--file-pair-list` command with aspera
Closed
8 years ago
Comments count
1
Remove use of Entrez searches for taxid, and favour searching species ID column in assembly summary file
Closed
8 years ago
Comments count
1
Add functionality to control filtering
Closed
8 years ago