amyxlu

Open-Sora

Open-Sora: Democratizing Efficient Video Production for All

Open-Sora-Plan

This project aim to reproduce Sora (Open AI T2V model), we wish the open source community contribute to this project.

AI-Scientist

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

webdataset

A high-performance Python-based I/O system for large (and small) deep learning problems, with strong support for PyTorch.

fvcore

Collection of common code that's shared among different research projects in FAIR computer vision team.

mup

maximal update parametrization (µP)

esm

chai-lab

Chai-1, SOTA model for biomolecular structure prediction

PaddleHelix

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

AlphaFold3

Open source implementation of AlphaFold3

progen

Official release of the ProGen models

dit

Python package for information theory.

edm2

Analyzing and Improving the Training Dynamics of Diffusion Models (EDM2)

Uni-Fold

An open-source platform for developing protein models beyond AlphaFold.

CLEAN

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

bio-diffusion

A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)

plinder

Protein Ligand INteraction Dataset and Evaluation Resource

kronfluence

Influence Functions with (Eigenvalue-corrected) Kronecker-Factored Approximate Curvature

mhctools

Python interface to running command-line and web-based MHC binding predictors

deepgo

Function prediction using a deep ontology-aware classifier

flashattention2-custom-mask

Triton implementation of FlashAttention2 that adds Custom Masks.

particle-guidance

Implementation of Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models

AMPLIFY

karras-power-ema-tutorial

DGEB

Diverse Genomic Embedding Benchmark

elbowpatched-boilerplate

Create an academic personal website on Jekyll and GitHub Pages

deepgo2

beignet

A standard library for biological research.

EsmTherm

ProteinChat