amkram / nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

Nextclade

Viral genome clade assignment, mutation calling, and sequence quality checks

by Nextstrain team

🌎 clades.nextstrain.org

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📦 Packages

This repository consists of a set of packages presented in the table below. Refer to README files of individual packages for more details.

Package	Type	Get	Docker images
nextclade_web	Web App	🌎 clades.nextstrain.org
nextclade_cli	Node.js CLI	📦 @nextstrain/nextclade	🐋 nextstrain/nextclade
nextalign	C++ library
nextalign_cli	C++ executable	📥 Github Releases	🐋 nextstrain/nextalign

✨ Team

Nextclade is a part of Nextstrain project .

It is maintained by:

Ivan Aksamentov Senior Software Engineer NeherLab, Biozentrum, University of Basel

Richard Neher Principal Investigator NeherLab, Biozentrum, University of Basel

We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):

Emma Hodcroft 🤔 ⚠️ 📢 👀

Thomas Sibley 🚇 🛡️

Theo Sanderson 💻

Natalie Stroud 🖋 🌍

Alex Rubinsteyn 📖

Christopher Bottoms 📖

Finlay Maguire 📖

This project follows the all-contributors specification. Contributions of any kind welcome!

🏢 Sponsors

We are thankful to the following companies who supported us:

Vercel for sponsoring Nextclade builds on their platform

⚖️ License

MIT License