amkram

shusher

Private, browser-based placement of genome sequences on phylogenetic trees using UShER.

schedule-builder-export

Chrome extension to automatically export UCD Schedule Builder Calendars to Google Calendar

bash-splash

Display images in a terminal.

lua-HMM

A proof-of-concept n-order Hidden Markov Model with Viterbi decoding, implemented in Lua

oneTBB-2019-wasm

panmap

🧬 🌲 A phylo-pangenomic sequence assembler and genotype likelihood estimator. Read mapping guided by evolution with tree pangenomes.

CADMS-ASF-website

chromatone

hack-davis-2019

HackDavis entry: Research Portal - a website to connect undergraduates interested in research with the appropriate faculty, and vice versa

haplotype-compression

leap-paint

Paint with a Leap!

lsd2

A phylogeny dating method using least-squares algorithms and criteria

matreePy

Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit (In Development)

mkmh

Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

MuseScore

MuseScore is an open source and free music notation software. For support, contribution, bug reports, visit MuseScore.org. Fork and make pull requests!

nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

p4-guide

Guide to p4lang repositories and some other public info about P4

pangraph-tree

fork of neherlab/pangraph

parsimony

parsimony-2

parsimony-lfs

snippets

Short snippets of useful code (mostly comp bio stuff)

taxonium

Explore very large trees in the browser

te-compart

testing

testt

tmp

usher

Ultrafast Sample Placement on Existing Trees

usher_wiki

docs holder for usher wiki

wasmosis