Alex Kramer (amkram)

amkram

Geek Repo

Company:@corbett-lab

Location:Santa Cruz, CA

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Alex Kramer's repositories

shusher

Private, browser-based placement of genome sequences on phylogenetic trees using UShER.

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schedule-builder-export

Chrome extension to automatically export UCD Schedule Builder Calendars to Google Calendar

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bash-splash

Display images in a terminal.

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lua-HMM

A proof-of-concept n-order Hidden Markov Model with Viterbi decoding, implemented in Lua

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GETracker

UCD GE Requirement Tracker

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hack-davis-2019

HackDavis entry: Research Portal - a website to connect undergraduates interested in research with the appropriate faculty, and vice versa

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leap-paint

Paint with a Leap!

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lsd2

A phylogeny dating method using least-squares algorithms and criteria

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matreePy

Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit (In Development)

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mkmh

Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

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ML-iris

Very simple machine learning test, classifying Iris flowers into one of two classses

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MuseScore

MuseScore is an open source and free music notation software. For support, contribution, bug reports, visit MuseScore.org. Fork and make pull requests!

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nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

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p4-guide

Guide to p4lang repositories and some other public info about P4

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project-euler

Java solutions to Project Euler challenges

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snippets

Short snippets of useful code (mostly comp bio stuff)

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taxonium

Explore very large trees in the browser

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usher

Ultrafast Sample Placement on Existing Trees

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usher_wiki

docs holder for usher wiki

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