Ambarish Kumar's repositories
cproject
ArgProcessor and files for basic CMDirectories. Often subclassed. Needs to be separate from euclid and norma
cwl2wdl
Convert CWL to WDL
docker-4-bioinformatics
Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
galaxy-hub
Galaxy Community Hub
genome-browsers
Introductory course on visualising and manipulating genomic data
hml
Histoimmunogenetics Markup Language (HML).
intel-gatk4-somatic-with-preprocessing
Workflows for data pre-processing and initial calling of somatic SNP, Indel, and copy number variants optimized by Intel for on-premises infrastructure
nltk3-cookbook
Code for NLTK3 Cookbook
norma
Convert XML/SVG/PDF into normalised, sectioned, scholarly HTML
PyChEBI
"Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds."
SPARQL
collection of SPARQL queries for Wikidata, Uniprot and Wikipathways
sparql_to_pandas
Example for accessing SPARQL endpoints in Python with Pandas
SV2
Support Vector Structural Variation Genotyper
wikipathways-chromosomes
Mapping WikiPathways to chromosomes